Software

• SIM: a python module for sequence interaction problem.

• GAMMA: an R package for discovering gapped motifs under incomplete labeling.

• demotif: an R package for decompose hierarchical motifs.

• MHCpBT: an R package for estimating the MHC-peptide binding threshold using Gibbs sampling.

• KRE: a method based on the kernel regression to predict the viral epitopes.