Publications

Tang, X., & Liu, R. (corresponding author) (2026). GAMMA: Gap-aware motif mining under incomplete labeling with applications to MHC motifs. Bioinformatics, 42(2), btag014. DOI: 10.1093/bioinformatics/btag014

Xu, Y., Wei, G., Zhou, J., Huang, Y., Yu, W., Lin, Z., Liu, R. (joint corresponding author) & Fan, X. (2026). RoBep: a region-oriented deep learning model for B-cell epitope prediction. Bioinformatics, 42(1), btag006. DOI: 10.1093/bioinformatics/btag006

Liu, R., Tang, X., & Fan, X. (2025) Sequence interaction model with applications to TCR-peptide binding. The Annals of Applied Statistics, 19(4), 2683-2704. DOI: 10.1214/25-AOAS2114

Tang, X., & Liu, R. (corresponding author) (2025). De-motif sampling: an approach to decompose hierarchical motifs with applications in T cell recognition. Briefings in Bioinformatics, 26(3), bbaf221. DOI: 10.1093/bib/bbaf221

Liu, R., Hu, Y., Huang, J., & Fan, X. (2023). A Bayesian approach to estimate MHC-peptide binding threshold. Briefings in Bioinformatics, 24(4), bbad208. DOI: 10.1093/bib/bbad208

Liu, R., Hu, Y., Du, J., Zhang, B., Yau, T., Fan, X., & Huang, J. (2023). Family-specific training improves linear B cell epitope prediction for emerging viruses. IEEE Transactions on Computational Biology and Bioinformatics, 20(6), 3669–3680. DOI: 10.1109/TCBB.2023.3311444